pybedtools.scripts.intersection_matrix

Create a matrix of many pairwise intersections; see pybedtools.contrib.IntersectionMatrix for more flexibility

Functions

actual_intersection(a, b)
create_matrix(beds, func[, verbose])
enrichment_score(a, b, genome_fn[, ...])
example_filename(fn)	Return a bed file from the pybedtools examples directory.
frac_of_a(a, b)
get_name(fname)
main()	Creates a pairwise matrix containing overlapping feature counts for many

Classes

BedTool([fn, from_string, remote])