V3000Rdr

java.lang.Object

org.jmol.adapter.readers.molxyz.V3000Rdr

public class V3000Rdr extends Object

A reader for Accelrys V3000 files.

http://www.mdli.com/downloads/public/ctfile/ctfile.jsp

Field Summary

Fields

Modifier and Type

Field

Description

private String

line

private MolReader

mr

private Map<String,String[]>

userData
Constructor Summary

Constructors

Constructor

Description

V3000Rdr()
Method Summary

Modifier and Type

Method

Description

private void

checkLineContinuation()

private String

getField(String key)

private String

rd()

private void

readAtoms(int ac)

(package private) void

readAtomsAndBonds(String[] tokens)

private void

readBonds(int bondCount)

private void

readUserData(int ac)

(package private) V3000Rdr

set(AtomSetCollectionReader mr)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- mr
  
  private MolReader mr
- line
  
  private String line
- userData
  
  private Map<String,String[]> userData
Constructor Details
- V3000Rdr
  
  public V3000Rdr()
Method Details
- set
  
  V3000Rdr set(AtomSetCollectionReader mr)
- readAtomsAndBonds
  
  void readAtomsAndBonds(String[] tokens) throws Exception
  
  Throws:
  
  Exception
- readAtoms
  
  private void readAtoms(int ac) throws Exception
  
  Throws:
  
  Exception
- readBonds
  
  private void readBonds(int bondCount) throws Exception
  
  Throws:
  
  Exception
- readUserData
  
  private void readUserData(int ac) throws Exception
  
  Throws:
  
  Exception
- getField
  
  private String getField(String key)
- rd
  
  private String rd() throws Exception
  
  Throws:
  
  Exception
- checkLineContinuation
  
  private void checkLineContinuation() throws Exception
  
  Throws:
  
  Exception