Package org.jmol.adapter.smarter

Class Structure

  • All Implemented Interfaces:
    java.lang.Cloneable
    public class Structure
extends java.lang.Object
implements java.lang.Cloneable

    • Field Detail

      • structureType

        public STR structureType

      • substructureType

        public STR substructureType

      • structureID

        public java.lang.String structureID

      • serialID

        public int serialID

      • strandCount

        public int strandCount

      • startSequenceNumber

        public int startSequenceNumber

      • startChainID

        public int startChainID

      • startInsertionCode

        public char startInsertionCode

      • endSequenceNumber

        public int endSequenceNumber

      • endChainID

        public int endChainID

      • endInsertionCode

        public char endInsertionCode

      • atomStartEnd

        public int[] atomStartEnd

      • modelStartEnd

        public int[] modelStartEnd

      • bsAll

        public javajs.util.BS[] bsAll

    • Constructor Detail

      • Structure

        public Structure​(int modelIndex,
                 STR structureType,
                 STR substructureType,
                 java.lang.String structureID,
                 int serialID,
                 int strandCount,
                 javajs.util.BS[] bsAll)

    • Method Detail

      • getHelixType

        public static STR getHelixType​(int type)

      • set

        public void set​(int startChainID,
                int startSequenceNumber,
                char startInsertionCode,
                int endChainID,
                int endSequenceNumber,
                char endInsertionCode,
                int istart,
                int iend)

      • clone

        public Structure clone()
        Overrides:
        clone in class java.lang.Object